GSEABenchmarkeR

The GSEABenchmarkeR
package implements an extendable framework for
reproducible evaluation of set- and network-based methods for enrichment
analysis of gene expression data. This includes support for the efficient
execution of these methods on comprehensive real data compendia (microarray and
RNA-seq) using parallel computation on standard workstations and
institutional computer grids. Methods can then be assessed with respect to
runtime, statistical significance, and relevance of the results for the
phenotypes investigated.

Installation

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("GSEABenchmarkeR")