docker-velocyto

Dockerized Velocyto v0.17.17

How to Run

$ docker run -it --rm velocyto:0.17.17
Usage: velocyto [OPTIONS] COMMAND [ARGS]...
Options:
  --version  Show the version and exit.
  --help     Show this message and exit.
Commands:
  run            Runs the velocity analysis outputting a loom file
  run10x         Runs the velocity analysis for a Chromium Sample
  run-dropest    Runs the velocity analysis on DropEst preprocessed data
  run-smartseq2  Runs the velocity analysis on SmartSeq2 data (independent bam file per cell)
  tools          helper tools for velocyto

Build Container Image

./build.sh

Push to Docker Registry

Either you can use the docker push command or run push.sh (requires SCING):

./push.sh