项目作者: greenelab

项目描述 :
Transfer learning + gene expression
高级语言: Jupyter Notebook
项目地址: git://github.com/greenelab/whistl.git
创建时间: 2019-10-01T15:24:00Z
项目社区:https://github.com/greenelab/whistl

开源协议:BSD 3-Clause "New" or "Revised" License

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WhISTL: Whole blood Infection Signature detection via Transfer Learning

This repository aims to test the efficacy of transfer learning on gene expression data by answering the following questions:

  1. Does (pre?)training a classifier to differentiate between blood gene expression from sepsis patients and healthy patients allow us to make better predictions about infectious diseases?
  2. Does a sepsis classifier trained on humans have any predictive power on mice?
  3. Do gene expression signatures learned by a model trained on microarray data transfer to RNA-seq data?