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项目作者： jsta

项目描述 ：
Improved estimation of phytoplankton abundance and fine-scale water quality features via simultaneous discrete and semi-continuous surveys
高级语言： TeX
项目地址: git://github.com/jsta/dataflowchl.git
创建时间： 2017-01-14T23:12:42Z
项目社区：https://github.com/jsta/dataflowchl
开源协议：
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Code for Stachelek et al. (2017)

DOI

Jemma Stachelek, Christopher J. Madden, Stephen Kelly, Michelle Blaha
(submitted). Improved estimation of phytoplankton abundance and
fine-scale water quality features via simultaneous discrete and
semi-continuous surveys.

Dependencies

R packages
DataflowR ggsn remake knitr
raster maptools gdalUtils kableExtra
ggplot2 cowplot sf magrittr
dplyr viridis fitdistrplus gstat
ggrepel sp GGally ggjoy

Data

Christopher J. Madden, Jemma Stachelek, Stephen Kelly, Michelle Blaha
(2017) Florida Bay water quality estimated by underway flow-through
measurement. KNB Data Repository. http://dx.doi.org/10.5063/F11R6NGR

Build

Building the figures, tables, and manuscript has been streamlined with
GNU make. See the items defined as
build targets by running the following line in the terminal:

$ make help

  1. ## data                          copy data from archives
  2. ## data/goodyears.csv            listing of surveys with good spatial coverage
  3. ## data/allstreaming.csv         move streaming data from archive folder
  4. ## data/allgrabs.csv             move grab data from archive folder
  5. ## figures                       create figures
  6. ## figures/multipanel.png        create multipanel figure
  7. ## figures/multipanel_salinity.pngcreate salinity multipanel
  8. ## figures/multipanel_mb.png     create multipanel figure zoomed to Manatee Bay
  9. ## figures/multipanel_jb.png     create multipanel figure zoomed to Joe Bay
  10. ## figures/fbmap_dflow.png       create Florida Bay basemap with dflow grab points
  11. ## figures/fbmap_wqmn.png        create Florida Bay basemap with wqmn grab points
  12. ## figures/fbmap.png             create 2 panel Florida Bay basemap with grab points
  13. ## figures/rain.png              create rain time-series figure
  14. ## figures/chlboxplot.png        create chlorophyll boxplot
  15. ## figures/nonchlboxplot.png     create non-chlorophyll boxplot
  16. ## figures/chltimeseries.png     create chlorophyll time-series plot 
  17. ## figures/avmap.png             create average chl and phycoc maps
  18. ## figures/boundaries.png        create boundaries figure
  19. ## tables                        create tables
  20. ## manuscripts/est_coast/table_2.texcreate table 2
  21. ## ms                            compile ms
  22. ## diff                          create latexdiff pdf