Full stack application for creating and storing combinatorial genetic design spaces.
1) Install Docker Compose
2) Clone this repository
3) Run docker-compose up --build in the root directory of this repo
4) Open Knox web interface at http://localhost:8080
1) Install Neo4J
2) Open the Desktop app and add a new project
3) Within the project, click “Add Graph”, then create a local graph using “kn0x“ as password
4) Click “Start”
7) Download and Install Maven
8) Clone this repository
9) Run mvn spring-boot:run in the root directory of this repo
10) Open Knox web interface at http://localhost:8080
Nicholas Roehner, James Roberts, Andrei Lapets, Dany Gould, Vidya Akavoor, Lucy Qin, D. Benjamin Gordon, Christopher Voigt, and Douglas Densmore. GOLDBAR: A Framework for Combinatorial Biological Design. ACS Synthetic Biology Article ASAP (2024).
DOI: https://pubs.acs.org/doi/full/10.1021/acssynbio.4c00296